Batch Search Help

A batch search allows you to enter multiple protein accession numbers and retrieve the matching protein record(s). The program retrieves a list of the proteins showing their MiGenes status indicating whether they are considered mitochondrial, mito-related, or unrelated (see MitoPostulates), or that the accession number is not recognized. The batchwise search is useful for examining lists of proteins reported in published sequencing studies as well as for checking the mitochondrial status of proteins identified in protein sequencing experiments. The result for each entry provides a link to the protein detail information page as shown below. You have the option of downloading the output as a comma-delimited list that can be imported directly into Excel.

The batch search also provides a function to search protein information by using nucleotide identifiers, such as locuslink id numbers. Since the collection of nucleotide accession numbers is very long, the Program requests that you limit the search to a particular organism to shorten search time. Long lists will require some time to process, so you should refresh the display occasionally. Note that nucleotide accession numbers may be linked to multiple protein records.

Batchwise Search Accepts the following format of ID/name:

A. Batchwise Protein Search:

1. RefSeq protein accession numbers, for exampe: NP_006105

2. RefSeq mRNA accession numbers, for example: NM_026310

3. Uniprot accession numbers, for exmample: Q7TQD6, PROP_MOUSE

4. DDBJ/EMBL protein record , for example: BAA06332/AAA20683

5. Wormbase protein ID, for example: CE34069

6. S. cerevisiae systematic name, for example: YCL012C

7. NCBI Protein GI number, for exmaple: 4759079

8. NCBI Protein Accession number, for example: AAZ30760

9. Protein Name/descriptive, for example: Arylamide acetylase 1

10. Protein Alias, for example: MAK18 from SGD,

B. Batchwise Gene Search (It could take some time to complete):

1. Locuslink ID numbers, for example: 639063

2. NCBI Nucleotide GI number, for example: 4759079

3. NCBI UniGene ID, for example: Dm.2294, Cel.18297, Mm.22453, Hs.546236, Rn.2549

4. Flybase ID, for example: FBgn0050481

5. DDBJ/EMBL nucleotide record, for example: BC000913/U94703

6. NCBI OMIM ID, for example: 107280

7. NCBI Nucleotide accession number, for example: CB386060

8. Ensembl Gene ID, for example: ENSG00000114771

9. SGD standard name, for example: ATP15

10. NCBI Entrez Gene Official Symbol, for example: A2M

11. Gene Name/descriptive, for example: USP33 from Uniprot, SPAC56F8.04c from GeneDB

12. Gene Alias, for example: KIAA1097 from Uniprot

Batchwise Search Front Page:

Batchwise Search Result:

User can download the search result. The link at the result page for each entry directs to the protein detail inforamtion page as shown below. Please close MiGenes Protein detail page when you are not using it.