Basic Science Tower, Stony Brook University, Stony Brook, NY 11794-8651 / 631-444-3219
Medical Scientist (M.D./Ph.D.) Training Program
MSTP-Associated Research Publications Completed by Trainees
(pre-MSTP publications indicated with an *)

2011:
Ahearn IM, Tsai FD, Court H, Zhou M, Jennings BC, Ahmed M, Fehrenbacher N, Linder ME, Philips MR. (2011). FKBP12 binds to acylated h-ras and promotes depalmitoylation. Mol Cell. 41(2):173-85.

Goldstein JA, Kelly SM, LoPresti PP, Heydemann A, Earley JU, Ferguson EL, Wolf MJ, McNally EM. (2011). TGFb signaling drives progression in muscular dystrophy. Human Molecular Genetics 20; 20(5):894-904. PMID: 21138941.

Vijayakumar S, Liu G, Rus IA, Yao S, Chen Y, Akiri G, Grumolato L, Aaronson SA. (2011). High-Frequency Canonical Wnt Activation in Multiple Sarcoma Subtypes Drives Proliferation through a TCF/ß-Catenin Target Gene, CDC25A. Cancer Cell. 19(5):601-12.


Pérez CA, Stanley SA, Wysocki RW, Havranova J, Ahrens-Nicklas R, Onyimba F, Friedman JM. (2011). Molecular annotation of integrative feeding neural circuits. Cell Metab. Feb; 13(2):222-232.

2010:
Abraham, A. Characterization of Gene and Protein Expression Patterns of Chromatin Structural Proteins HMGB1, 2, 3, and 4 in Proliferating and Differentiating Forebrain Neural Stem Cells. In preparation.

Ahmed M, Davis J, Aucoin D, Sato T, Ahuja S, Aimoto S, Elliott JI, Van Nostrand WE, Smith SO. (2010). Structural conversion of neurotoxic amyloid-beta(1-42) oligomers to fibrils. Nat Struct Mol Biol. 17(5):561-7.

Liao MC, Hoos MD, Aucoin D, Ahmed M, Davis J, Smith SO, Van Nostrand WE. (2010). N-terminal domain of myelin basic protein inhibits amyloid beta-protein fibril assembly. J Biol Chem. 285(46):35590-8.


Dong L., Aleem S., Fink C. A. (2010). Microwave-accelerated reductive amination between ketones and ammonium acetate. Tetrahedron Letters. 51(39):5210-5212

Bagdanoff J.T., Donoviel M.S., Nouraldeen A., Carlsen M., Jessop T.C., Tarver J., Aleem S., Dong L., Zhang H., Boteju L., Hazelwood J., Yan J., Bednarz M., Layek S., Owusu I.B., Gopinathan S., Moran L., Lai Z., Kramer J., Kimball S.D., Yalamanchili P., Heydorn W.E., Frazier K.S., Brooks B., Brown P., Wilson A., Sonnenburg W.K., Main A., Carson K.G., Oravecz T., Augeri D.J. (2010). Inhibition of sphingosine 1-phosphate lyase for the treatment of rheumatoid arthritis: discovery of (E)-1-(4-((1R,2S,3R)-1,2,3,4-tetrahydroxybutyl)-1H-imidazol-2-yl)ethanone oxime (LX2931) and (1R,2S,3R)-1-(2-(isoxazol-3-yl)-1H-imidazol-4-yl)butane-1,2,3,4-tetraol (LX2932).J Med Chem. 53(24):8650-62. Epub 2010 Nov 22.

Love D, Li FQ, Burke MC, Cyge B, Ohmitsu M, Cabello J, Larson JE, Brody SL, Cohen JC, Takemaru K. (2010). Altered Lung Morphogenesis, Epithelial Cell Differentiation and Mechanics in Mice Deficient in the Wnt/ß-Catenin Antagonist Chibby. PLoS One. 5(10):e13600.PMID: 21049041 [PubMed - in process] Free Article Related citations.

Bombardelli, L., Carpenter, E., Wu, A., Alston, N., DelGiorno, K., Crawford, C. (2010). Pancreas-Specific Ablation of ß1 Integrin Induces Tissue Degeneration by Disrupting Acinar Cell Polarity. Gastroenterology. In Press.

Christian Montag, Magdalena Jurkiewicz, and Martin Reuter. (2010). Low self-directedness is a better predictor for problematic internet use than high neuroticism. Accepted.

Christian Montag, Matthias Flierl, Sebastian Markett, Nora Walter, Magdalena Jurkiewicz & Martin Reuter. (2010). Internet addiction, personality and psychological well-being in adolescent excessive online computer gamers. Submitted.

*Peters TM, Moore SC, Gierach GL, Wareham NJ, Ekelund U, Hollenbeck AR, Schatzkin A, Leitzmann MF. Intensity and timing of physical activity in relation to postmenopausal breast cancer risk: the prospective NIH-AARP Diet and Health Study. BMC Cancer. In press.

*Peters TM, Shu XO, Moore SC, Xiang YB, Yang G, Ekelund U, Liu D, Tang Y, Ji BT, Schatzkin AS, Zheng W, Chow WH, Matthews CE, Leitzmann MF. Validity and reliability of a past-year physical activity questionnaire in the Shanghai Physical Activity Study. (Under review).

*Peters TM, Moore SC, Xiang YB, Yang G, Shu XO, Ekelund U, Ji BT, Liu D, Tang Y, Schatzkin AS, Zheng W, Chow WH, Matthews CE, Leitzmann MF. Prevalence and correlates of accelerometer-measured physical activity and sedentary behaviour in urban Chinese adults. (Under review).

Premsrirut, P.K. et al. A rapid and scalable system for studying gene function in mice using conditional RNA interference. (2010) in submission.

Corrales, A, I. Talukder, C. Salussolia, R. Kazi, and L. P. Wollmuth. Channel gating in mammalian glutamate receptors requires the interaction of the M4 segment with other transmembrane elements. In preparation.

Salussolia, CL, Prodromou, M, Borker, P, and Wollmuth, LP. Subunit asymmetry in the M3-S2 linkers during gating in NMDA receptors (In preparation).

Corrales, A, Talukder, I, Salussolia, CL, Kazi, R, and Wollmuth, LP. Interaction of the M4 segement with other Transmembrane Segments is required for Channel Gating in Mammalian Glutamate Receptors (In preparation).

Talukder, I., Borker, P. and Wollmuth, L.P. Linkers connecting the NMDA receptor Ligand-binding and Ion Channel Domains as sites of Non-competitive Gating Modulation. In preparation.

*Silva A, Lee JH, Wu WH, Tucciarone J, Aoki I, Koretsky AP. Cortical Laminar Architecture Detected Non-Invasively Using Manganese Enhanced MRI. Journal of Neuroscience Methods. 2008. 167(2): 246-257.

Hedbacker K, Birsoy K, Wysocki RW, Asilmaz E, Ahima RS, Farooqi IS, Friedman JM. (2010). Antidiabetic effects of IGFBP2, a leptin-regulated gene. Cell Metab. Jan.; 11(1):11-22.

Oladapo Yeku and M.A Frohman. Rapid Amplification of cDNA ends (RACE), in Methods in Molecular Biology, Henrik Nielsen., Editor. Humana Press: New York. In press.

2009
:
Hoos MD, Ahmed M, Smith SO, and Van Nostrand WE. (2009). Myelin basic protein binds to and inhibits the fibrillar assembly of Abeta42 in-vitro. Biochemistry. 48(22):4720-7.

Liao MC, Ahmed M, Smith SO, and Van Nostrand WE. (2009). Degradation of amyloid beta protein by purified myelin basic protein. J Biol Chem. 284(42):28917-25.

Bale TA and Solomon IC. (2009). Influence of 5-HT2A receptor blockade on phrenic nerve discharge at three levels of extracellular K+ in arterially-perfused adult rat. Adv Exp Med Biol 669: 139-142.

*Johansson BE, Brett IC. (2009) Mouse models of influenza. Handbook on Immunosenescence: basic understanding and clinical applications. Fulop, T.; Franceschi, C.; Hirokawa, K.; Pawelec, G. (Eds.) Springer Science+Business Media BV.

L. Cheney, J. Hou, S. Morrison, J. Pessin, R. Steigbigel. (2009). Nef Inhibits Glucose Uptake in Adipocytes and Can Account for the Insulin Resistance Caused by Human Immunodeficiency Virus Type-I. Submitted.

*DeMarco A, Dalal RM, Pai J, Aquilina SD, Mullapudi U, Hammel C, Kothari SK, Kahanda M, Liebling CN, Patel V, Schiffer WK, Brodie JD, Dewey SL. (2009). Racemic gamma vinyl-GABA (R,S-GVG) blocks methamphetamine-triggered reinstatement of conditioned place preference. Synapse. Feb;63(2):87-94.

Maffei A, Griffen T, Fontanini A. (2009). Development of signal propagation between layers in visual cortex. In preparation.

*Guja, K. and Schildbach, J.F. Fine Specificity Determinants of Single-stranded DNA Recognition by F and R100 Relaxases. BMC Microbiology. 2009, in press.

Marchenko, ND, Hanel W, Becker K, Reich N, and Moll UM.
Stress-mediated nuclear stabilization of p53 is regulated by ubiquitination and importin alpha3 binding. EMBO.

Robak LA, Venkatesh K, Lee H, Raiker SJ, Duan Y, Lee-Osbourne J, Hofer T, Mage RG, Rader C, Giger RJ. (2009). Molecular basis of the interactions of the Nogo-66 receptor and its homolog NgR2 with myelin-associated glycoprotein: development of NgROMNI-Fc, a novel antagonist of CNS myelin inhibition. J Neurosci. 29(18):5768-83. PMID: 19420245.

*Wu C, Sodickson A, Cai T, Levit NA, Steigner M, Rybicki F, Ledbetter S. Heads or Tails? (2009). Comparison of respiratory motion artifact in 64-MSCT pulmonary angiography from cranio-caudal versus caudo-cranial scanning. American Journal of Roentgenology. Aug;27. Submitted.

*Lu MT, Cai T, Ersoy H, Whitmore AG, Levit NA, Goldhaber SZ, Rybicki FJ. (2009). Comparision of ECG gated versus non-gated CT ventricular measurements in thirty patients with acute pulmonary embolism. International Journal of Cardiovascular Imaging. Jan;25(1):101-7. Epub 2008 Jul 15.

*Steigner ML, Otero HJ, Cai T, Mitsouras D, Nallamshetty L, Whitmore AG, Ersoy H, Levit NA, Di Carli MF, Rybicki FJ. (2009). Narrowing the phase window in prospectively ECG-gated single heart beat 320-detector row coronary angiography. International Journal of Cardiovascular Imaging. Jan;25(1):85-90. Epub 2008 Jul 29.

*Peters TM, A Schatzkin, GL Gierach, SC Moore, JV Lacey Jr, NJ Wareham, U Ekelund, AR Hollenbeck, MF Leitzmann. Physical activity and postmenopausal breast cancer risk in the NIH-AARP Diet and Health study. CEBP 18(1):289-96, 2009.

*Moore SC, Peters TM, Ahn J, Park Y, Schatzkin A, Albanes D, Hollenbeck A, Leitzmann MF. (2009). Age-specific physical activity and prostate cancer risk among white men and black men. Cancer. (online view).

Hajcak G, Castille C, Olvet DM, Dunning JP, Roohi J, Hatchwell E. (2009). Genetic variation in brain-derived neurotrophic factor and human fear conditioning. Genes Brain Behav. 8(1):80-5. PMID: 19220486.

Roohi J, DeVincent CJ, Hatchwell E, Gadow KD. (2009). Association of a monoamine oxidase-a gene promoter polymorphism with ADHD and anxiety in boys with autism spectrum disorder. J Autism Dev Disord. 39(1):67-74. PMID: 18566880.

Roohi J, Montagna C, Tegay DH, Palmer LE, DeVincent C, Pomeroy JC, Christian SL, Nowak N, Hatchwell E. (2009). Disruption of contactin 4 in three subjects with autism spectrum disorder. J Med Genet. 46(3):176-82. PMID: 18349135.

Rosenberg AZ, Liu S, Feigin ME, Lamarca HL, Wang Z, Hannon GH, Medina D, Allred DC, Wicha MS, Rosen JM, Muthuswamy SK Scribble regulates asymmetric cell division and luminal differentiation of mammary epithelial progenitors (Submitted 2009)

Kelly DJ, Rosen AB, Schuldt AJ, Kochupura PV, Doronin SV, Potapova IA, Azeloglu EU, Badlyak SF, Brink PR, Cohen IS, Gaudette GR. (2009). Increased Myocyte Content and Mechanical Function Within a Tissue-Engineered Myocardial Patch Following Implantation. Tissue Eng Part A. Ahead of print. PMID: 19231971.

*Tucciarone J, Chuang KH, Dodd SJ, Silva A, Pelled G, Koretsky AP. (2009). Layer Specific Tracing of Cortical and Thalamic Connections Using Manganese Enhanced MRI. Neuroimage. Feb 1; 44(3):923-31.

Oladapo Yeku, Elizabeth Scotto-Lavino, and M.A Frohman. (2009). Use of 5'-RACE for alternative transcription in an endocrine cancer, in Molecular Endocrinology. O.-K. Park- Sarge, Curry, Jr., Thomas E., Editor. Humana Press: New York. p. 300. In press.

Ping Huang, O.Yeku., Xiao Xu, Phyllis Tsang, Mary Osisami, Haihong Zong, Yasunori Kanaho, Jeffrey E. Pessin, and Michael A. Frohman. (2009). Phosphatidylinositol 4-Phosphate 5-Kinase a deficiency alters dynamics of glucose-stimulated insulin secretion and protects against Type II diabetes and obesity in mice. Diabetes. Submitted.

Yeku O, Scotto-Lavino E, Frohman MA. (2009). Identification of Alternative Transcripts Using Rapid Amplification of cDNA Ends (RACE). Methods Mol Biol. 590:279-94. PMID: 19763511.

Su W, Yeku O, Olepu S, Genna A, Park JS, Ren H, Du G, Gelb MH, Morris AJ, Frohman MA. (2009). 5-Fluoro-2-indolyl des-chlorohalopemide (FIPI), a phospholipase D pharmacological inhibitor that alters cell spreading and inhibits chemotaxis. Mol Pharmacol. 75(3):437-46. PMID: 19064628.

Zanazzi, George, Matthews, G. (2009). Complexins 3 and 4 are enriched at sensory synapses that contain ribbons. To be submitted to Journal of Comparative Neurology.

Zanazzi, George, Matthews, G. (2009). The molecular architecture of ribbon presynaptic terminals. Molecular Neurobiology. 39:130-48. PMID: 19253034.


2008:
Jia Z, Bien H, Entcheva E. (2008). A sensitive algorithm for automatic detection of space-time alternating signals in cardiac tissue. Conf Proc IEEE Eng Med Biol Soc. 153-6. PMID: 19162616.

*Johansson BE, Brett IC. Recombinant influenza B virus HA and NA antigens administered in equivalent amounts are immunogenically equivalent and induce equivalent homotypic and broader heterovariant protection in mice than conventional and live influenza vaccines. Human Vaccine. 2008 Nov-Dec;4(6):420-4.

Nolin W, Emmetsberger J, Bukhari N, Zhang Y, Levine J, Tsirka S. (2008). tPA-Mediated Generation of Plasmin is Catalyzed by the Proteoglycan NG2. GLIA. 56:177-189.

Zhou CC , Chen KY , Breslow JL. (2008). Activation of pregnane X receptor induces hypercholesterolemia and accelerates atherosclerosis in mice. ATVB. Jun; 28(6):E32

*DeMarco A, Dalal RM, Kahanda M, Mullapudi U, Pai J, Hammel C, Liebling CN, Patel V, Brodie JD, Schiffer WK, Dewey SL, Aquilina SD. (2008). Subchronic racemic gamma vinyl-GABA produces weight loss in Sprague Dawley and Zucker fatty rats. Synapse. Nov;62(11):870-2.

*Anderson, B. J., Larkin, C., Guja, K., and Schildbach, J. F. Using fluorophore-labeled oligonucleotides to measure affinities of protein-DNA interactions. Methods in Enzymology. 2008, 450:253-272.

*Hekman, K., Guja, K., Larkin, C., and Schildbach, J. F. An intrastrand three-DNA-base interaction is a key specificity determinant of F transfer initiation and of F TraI relaxase DNA recognition and cleavage. Nucleic Acids Research. 2008, 36(14):4565-4572.

*Lai, L., Leone, T. C., Zechner, C., Schaeffer, P. J., Kelly, S. M., Flanagan, D. P., Medeiros, D. M., Kovacs, A., and Kelly, D. P. (2008) Transcriptional coactivators PGC-1alpha and PGC-lbeta control overlapping programs required for perinatal maturation of the heart, Genes Dev 22, 1948-1961.

Kwofie MA, Skowronski J. (2008). Specific recognition of Rac2 and Cdc42 by DOCK2 and DOCK9 guanine nucleotide exchange factors. J Biol Chem. 283(6):3088-96. PMID: 18056264.


Mittra E, Rubin C, Gruber B, Qin YX. (2008). Evaluation of trabecular mechanical and microstructural properties in human calcaneal bone of advanced age using mechanical testing, microCT, and DXA. J Biomech. 41(2):368-75. PMID: 17953972.


*Moore SC, TM Peters, J Ahn, Y Park, A Schatzkin, D Albanes, R Ballard-Barbash, A Hollenbeck, MF Leitzmann. (2008). Physical activity in relation to total, advanced, and fatal prostate cancer. CEBP. 17(9):2458-66.

*Leitzmann MF, SC Moore, TM Peters, JV Lacey Jr, A Schatzkin, C Schairer, LA Brinton, D Albanes. (2008). Prospective study of physical activity and risk of postmenopausal breast cancer. Cancer Res. 10(5):R92.

Gao Z, Wang J, Thiex R, Rogove AD, Heppner FL, Tsirka SE. (2008). Microglial activation and intracerebral hemorrhage. Acta Neurochir Suppl. 105:51-3. PMID: 19066082.

Roohi J
, Cammer M, Montagna C, Hatchwell E. (2008). An improved method for generating BAC DNA suitable for FISH. Cytogenet Genome Res. 121(1):7-9. PMID: 18544919.

Roohi J, Tegay DH, Pomeroy JC, Burkett S, Stone G, Stanyon R, Hatchwell E. (2008). A de novo apparently balanced translocation [46,XY,t(2;9)(p13;p24)] interrupting RAB11FIP5 identifies a potential candidate gene for autism spectrum disorder. Am J Med Genet B Neuropsychiatr Genet. 147B(4):411-7. PMID: 18384058.


Rosen, M.R., Brink, P.R., Cohen, I.S., Danilo Jr., P., Robinson, R.B., Rosen, A.B., and Szabolcs, M.J. (2008). Regenerative therapies in electrophysiology and pacing. Journal of Interventional Cardiac Electrophysiology. 22(2):87-98.

Potapova, I.A., Doronin, S.V., Kelly, D.J., Rosen, A.B., Schuldt, A.J.T., Lu, Z., Kochupura, P.V., Robinson, R.B., Rosen, M.R., Brink, P.R., Gaudette, G.R., and Cohen, I.S. Enhanced recovery of mechanical function in the canine heart by seeding an extracellular matrix patch with mesenchymal stem cells committed to a cardiac lineage. American Journal of Physiology. Provisional acceptance.

Zhan L, Rosenberg A, Bergami KC, Yu M, Xuan Z, Jaffe AB, Allred C, Muthuswamy SK. (2008). Deregulation of scribble promotes mammary tumorigenesis and reveals a role for cell polarity in carcinoma. Cell. 135(5):865-78. PMID: 19041750.

*Geer CB, Stasko NA, Rus IA, Lord ST, Schoenfisch MH. Influence of glutathione and its derivatives on fibrin polymerization. Biomacromolecules. 2008 Jul;9(7):1876-82.

Potapova IA, Doronin SV, Kelly DJ, Rosen AB, Schuldt AJ, Lu Z, Kochupura PV, Robinson RB, Rosen MR, Brink PR, Gaudette GR, Cohen IS. (2008). Enhanced recovery of mechanical function in the canine heart by seeding an extracellular matrix patch with mesenchymal stem cells committed to a cardiac lineage. Am J Physiol Heart Circ Physiol. 295(6):H2257-63. PMID: 18835924.

Schuldt AJ, Rosen MR, Gaudette GR, Cohen IS. Repairing damaged myocardium: evaluating cells used for cardiac regeneration. (2008). Curr Treat Options Cardiovasc Med. 10(1):59-72. PMID: 18325308.

2007
:
Hoos MD, Ahmed M, Smith SO, and Van Nostrand WE. (2007). Inhibition of familial cerebral amyloid angiopathy mutant amyloid beta-protein fibril assembly by myelin basic protein. Journal of Biological Chemistry. 282(13):9952-61.

*Niranjanakumari N, Day-Storms JJ, Ahmed M, Hsieh J, Zahler NH, Venters RA, and Fierke CA. (2007). Probing the architecture of the b. subtilis RNase P holoenzyme active site by crosslinking and affinity cleavage. RNA. 13(4):521-35.

Bhatt, DH, McLean, DL, Hale, ME, Fetcho, JR. (2007). Grading movement strength by changes in firing intensity versus recruitment of spinal interneurons. Neuron. 53(1):91-102. PMID: 17196533.

Bien H, Parikh P and Entcheva E (2007). Lenses and effective spatial resolution in optical mapping. Physics in Medicine and Biology. 52(4):941-960.

Chung CY, Bien H, Entcheva E. (2007). J Cardiovasc Electrophysiol. 18(12):1323-9. PMID: 17916158.

Johansson BE, Brett IC. (2007). Changing perspective on immunization against influenza. Vaccine. 25(16):3062-5.

Wolfrum S , Teupser D , Tan M , Chen KY, Breslow JL. (2007). The protective effect of A20 on atherosclerosis in apolipoprotein E-deficient mice is associated with reduced expression of NF-kappa B target genes. PNAS. Nov. 20; 104(47):18601-18606. PMCID 2141823

Apostolis, C., De Jesus, N. H., and Garely, A. D. Enterovaginal fistula formation in the context of mesh erosion following abdominal sacrocolpopexy. (Manuscript in Preparation).

Cello, J., Toyoda, H., De Jesus, N., Dobrikova, E. Y., Gromeier, M., and Wimmer, E. (2007). Growth phenotypes and biosafety profiles in poliovirus-receptor transgenic mice of recombinant oncolytic polio/human rhinoviruses. J Med Virol. 80(2):352-9. PMID: 18098139.

De Jesus, N. H. (2007). Epidemics to eradication: the modern history of poliomyelitis. Virol J. 4:70-88.

DiMartino SJ, Trujillo G, McVoy LA, Zhang J, Kew RR. (2007). Upregulation of vitamin D binding protein (Gc-globulin) binding sites during neutrophil activation from a latent reservoir in azurophil granules. Mol Immunol. 44(9):2370-7. PMID: 17113648.

Benveniste H, Ma Y, Dhawan J, Gifford A, Smith SD, Feinstein I, Du C, Grant SC, Hof PR. (2007). Anatomical and functional phenotyping of mice models of Alzheimer's disease by MR microscopy. Ann N Y Acad Sci. 1097:12-29. Review.

Mikhailik A, Ford B, Keller J, Chen Y, Nassar N, Carpino N. (2007). A phosphatase activity of Sts-1 contributes to the suppression of TCR signaling. Mol Cell. 27(3):486-97. PMID: 17679096.

Kocer, S.S., Richards A., Hanel W., Simon S.R. (2007). Mechanism of anthrax lethal factor inhibition by green tea products. (submitted)

Maitra A., Shen F., Hanel W., Mossman K., Tocker J., Swart D., Gaffen SL. (2007). Distinct functional motifs within the IL-17 receptor regulate signal transduction and target gene expression. Proc Natl Acad Sci. U.S.A. 104(18):7506-11. PMID: 17456598.

Tanner MJ., Hanel W., Gaffen SL., Lin X. (2007). CARMA1 coiled-coil domain is involved in the oligomerization and subcellular localization of CARMA1 and is required for T-cell receptor-induced NF-kappaB activation. J Biol Chem. 282(23):17141-7. PMID: 17428801.

Kramer JM., Hanel W., Shen F., Isik N., Malone J.P., Maitra A., Sigurdson W., Swart D., Tocker J., Jin T., Gaffen SL. (2007). Cutting Edge: Identification of a Pre-Ligand Assembly Domain (PLAD) and Ligand Binding Site in the IL-17 Receptor. J Immunology. 179(10): 6379:83. PMID: 17982023.

Allikian, M. J., Bhabha, G., Dospoy, P., Heydemann, A., Ryder, P., Earley, J. U., Wolf, M. J., Rockman, H. A., and McNally, E. M. (2007) Reduced life span with heart and muscle dysfunction in Drosophila sarcoglycan mutants, Hum Mol Genet 16, 2933-2943. (Follow up paper in press Goldstein, JA and Kelly, SM)

DiMartino SJ, Trujillo G, McVoy LA, Zhang J, Kew RR. (2007). Upregulation of vitamin D binding protein (Gc-globulin) binding sites during neutrophil activation from a latent reservoir in azurophil granules. Mol Immunol. 44(9):2370-7. PMID: 17113648.

Peters TM, U Ekelund, MF Leitzmann, D Easton, R Warren, R Luben, S Bingham, KT Khaw, NJ Wareham. (2007). Physical Activity and Mammographic Breast Density in the EPIC-Norfolk Cohort Study. American Journal of Epidemiology. 167(5):579-585.

Dickins, R.A., McJunkin, K., Hernando, E., Premsrirut, P.K., Krizhanovsky, V., Burgess, D.J., Kim, S.Y., Cordon-Cardo, C., Zender, L., Hannon, G.J. and Lowe, S.W. (2007). Tissue-specific and reversible RNAi in transgenic mice. Nature Genetics. 39:914-921.

Sobolevsky AI, Prodromou ML, Yelshansky MV, Wollmuth LP. (2007). Subunit-specific contribution of pore-forming domains to NMDA receptor channel structure and gating. J Gen Physiol. 129(6):509-25. PMID: 17504910.

Rampal R, Luther KB, Haltiwanger RS. (2007). Notch signaling in normal and disease States: possible therapies related to glycosylation. Curr Mol Med. 7(4):427-45. PMID: 17584081.

Sheehan JJ, Zhou C, Gravanis I, Rogove AD, Wu YP, Bogenhagen DF, Tsirka SE. (2007). Proteolytic activation of monocyte chemoattractant protein-1 by plasmin underlies excitotoxic neurodegeneration in mice. J Neurosci. 27(7):1738-45. PMID: 17301181.

Tegay DH, Lane AH, Roohi J, Hatchwell E. (2007). Contiguous gene deletion involving L1CAM and AVPR2 causes X-linked hydrocephalus with nephrogenic diabetes insipidus. Am J Med Genet A. 143(6):594-8.

Cohen, I.S., Rosen, A.B., and Gaudette G.R. (2007). A Caveat Emptor for myocardial regeneration: Mechanical without electrical recovery will not suffice. Journal of Molecular and Cellular Cardiology. 42(2): 285-288.

Rosen, A.B. (2007). Everything is illuminated … with quantum dots. Nanomedicine. 2(6):51-954.

Rosen, A.B., Kelly, D.J., Schuldt, A.J.T., Lu, J., Potapova, I.A., Doronin, S.V., Robichaud, K.J., Robinson, R.B., Rosen, M.R., Brink, P.B., Gaudette, G.R., and Cohen, I.S. (2007). Finding Fluorescent Needles in the Cardiac Haystack: Tracking human mesenchymal stem cells loaded with quantum dots for quantitative in vivo 3-D fluorescence analysis. Stem Cells. 25(8):2128 -2138.

Potapova, I.A., Doronin, S.V., Kelly, D.J., Rosen, A.B., Schuldt, A.J.T., Lu, Z., Guo, Y., Kochupura, P.V., Robinson, R.B., Rosen, M.R., Brink, P.R., Gaudette, G.R., and Cohen, I.S. (2007). Replacing damaged myocardium. Journal of Electrocardiology. 40(6):S199-S201.

Plotnikov, A.N., Shlapakova, I., Szabolcs, M.J., Danilo, Jr, P., Lorell, B.H., Potapova, I.A., Lu, Z., Rosen, A.B., Mathias, R.T., Brink, P.R., Robinson, R.B., Cohen, I.S., and Rosen, M.R. (2007). Xenografted adult human mesenchymal stem cells provide a platform for sustained biological pacemaker function in canine heart. Circulation. 116:706-713.

Geer CB, Rus IA, Lord ST, Schoenfisch MH. Surface-dependent fibrinopeptide A accessibility to thrombin. Acta Biomater. 2007 Sep;3(5):663-8.

Salussolia, CL, Nalwalk JW, and Hough LB. (2007). Improgan-induced hypothermia: A role for cannabinoid receptors in improgan-induced changes in nociceptive threshold and body temperature. Brain Research. 1152: 42-48.

Potapova IA, Doronin SV, Kelly DJ, Rosen AB, Schuldt AJ, Lu Z, Guo Y, Kochupura PV, Robinson RB, Rosen MR, Brink PR, Gaudette GR, Cohen IS. (2007). Replacing damaged myocardium. J Electrocardiol. 40(6 Suppl):S199-201. PMID: 17993323.

Rosen AB, Kelly DJ, Schuldt AJ, Lu J, Potapova IA, Doronin SV, Robichaud KJ, Robinson RB, Rosen MR, Brink PR, Gaudette GR, Cohen IS. (2007). Finding fluorescent needles in the cardiac haystack: tracking human mesenchymal stem cells labeled with quantum dots for quantitative in vivo three-dimensional fluorescence analysis. Stem Cells. 25(8):2128-38. PMID: 17495112.

Seandel M
, James D, Shmelkov SV, Falciatori I, Kim J, Chavala S, Scherr DS, Zhang F, Torres R, Gale NW, Yancopoulos GD, Murphy A, Valenzuela DM, Hobbs RM, Pandolfi PP, Rafii S. (2007). Generation of functional multipotent adult stem cells from GPR125+ germline progenitors. Nature. 449:346-50.

Weston CA, Teressa G, Weeks BS, Prives J. (2007). Agrin and laminin induce acetylcholine receptor clustering by convergent, Rho GTPase-dependent signaling pathways. J Cell Sci. 120(Pt 5):868-75. PMID: 17298982.

Weston CA, Teressa G, Weeks BS, Prives J. (2007). Agrin and laminin induce acetylcholine receptor clustering by convergent, Rho GTPase-dependent signaling pathways. J Cell Sci. 120(Pt 5):868-75. PMID: 17298982.

Zanazzi, George, Matthews, G. (2007). A doubleheader in endocytosis. Neuron. 56:939-42. PMID: 18093515.

2006
:

Mastrangelo, I.A., Ahmed M., Sato T., Liu W., Wang C., Hough P. and Smith S.O. (2006). High Resolution Atomic Force Microscopy of soluble Abeta42 oligomers. Journal of Molecular Biology. 21:358:106-19.

Sato T, Kienlen-Campard P, Ahmed M, Liu W, Li H, Elliott JI, Aimoto S, Constantinescu SN, Octave JN, and Smith SO (2006). Inhibitors of amyloid toxicity based on beta-sheet packing of Abeta40 and Abeta42. Biochemistry. 45:5503-16.


Archer H, Jura N, Keller J, Jacobson M, Bar-Sagi D. (2006). A mouse model of hereditary pancreatitis generated by transgenic expression of R122H trypsinogen. Gastroenterology. 131(6):1844-55. PMID: 17087933.

Bhatt, DH, Fetcho, JR, Zottoli, S (2006). Regeneration in the Adult Spinal Cord. Model Organisms In Regeneration. 1:263-288.

Pogoda, HM, Sternheim, N, Bhatt, DH, Fetcho, JR, Talbot, WS. (2006). A genetic screen identifies genes essential for axon myelination in zebrafish. Developmental Biology. 298(1):118-31. PMID: 16875686.


Singh R, Bien H, Entcheva E, Fenton FF. (2006). Inherent dispersion in restitution properties over space. Conf Proc IEEE Eng Med Biol Soc. 1:3935-8. PMID: 17947060.

Shah U, Bien H, Entcheva E. (2006). Cardiac arrhythmogenesis and temperature. Conf Proc IEEE Eng Med Biol Soc. 1:841-4. PMID: 17946861.

Bien H, Entcheva E, Pertsov A, Mironov S, Vetter F (2006). Spatial frequency content in optical mapping of cardiac cell monolayers. Am J Physiol – Heart & Circ Physiol. 291(3):H484-5.

Bien H, Yin L and Entcheva E (2006). Calcium instabilities in mammalian cardiomyocyte networks. Biophysical Journal. 90(7):2628-40.

Entcheva E and Bien H (2006). Macroscopic optical mapping of excitation in cardiac cell networks with ultra-high spatiotemporal resolution. Progress in Biophysics and Molecular Biology. 92(2):232-57.

Brett, I.C.,
and B.E. Johansson. (2006). Influenza B virus hemagglutinin and neuraminidase induce immunity similar to Influenza A and protect mice from infectious challenge. Virology. (Submitted).

Brett IC, Johansson BE. (2006). Variation of divalent cation requirements of influenza A virus N1 neuraminidases. J Biochem. 136:439-447.

Johansson BE, Brett IC. (2006). An inactivated subvirion influenza A (H5N1) vaccine. NEJM. 354(25):2724-5. (Letter to the editor)

Cheng TF, Brzostek S (2006). Ando O, Van Scoy S, Kumar KP, Reich NC. Differential Activation of IFN Regulatory Factor (IRF)-3 and IRF-5 Transcription. J Immunol. 176:7462-7470.

Chabra I and Hearing P. Utilization of a new adenovirus E1-, adeno-associated virus Rep-expressing cell line to readily produce gutted Ad vectors. (Submitted).

Shah, A.B., DiMartino, S.J., Trujillo, G., and Kew, R.R. (2006). Selective inhibition of the C5a chemotactic cofactor function of the vitamin D binding protein by 1,25(OH)2 vitamin D3. Mol. Immunol. 43:1109-15.

Ford, B., Hornak, V., Kleinman, H., and Nassar , N. (2006). Structure of a transient intermediate for GTP hydrolysis by ras. Structure. 14:427-36.

Kleinman, H., Ford, B., Keller, J., Carpino, N., and Nassar, N. (2006). Crystallization and initial crystal characterization of the C-terminal phosphoglycerate mutase homology domain of Sts-1. Acta Crystallograph Sect F Struct. Biol. Cryst Commun. 62:218-20.

Golebiewska U, Gambhir A, Hangyás-Mihályné G, Zaitseva I, Rädler J, McLaughlin S. (2006). Membrane-bound basic peptides sequester multivalent (PIP2), but not monovalent (PS), acidic lipids. Biophys J. 91(2):588-99. PMID: 16648167.

Boehm*, J., Ehrlich*, I., Hsieh*, H., Malinow, M. (2006). Two mutations preventing PDZ-protein interactions of GluR1 have opposite effects on synaptic plasticity. *Contributed equally to this work. Learn Mem. 13(5):562-5.

Hsieh H, Boehm J, Sato C, Iwatsubo T, Tomita T, Sisodia S, Malinow R. (2006). AMPAR removal underlies Abeta-induced synaptic depression and dendritic spine loss. Neuron. 52(5):831-43. PMID: 17145504.

Kassem, I.S. and Evinger, C. (2006). Asymmetry of blinking. Invest. Ophthalmol. Vis. Sci. 47:195-201.

LaLonde M, Janssens H, Yun S, Crosby J, Redina O, Olive V, Altshuller YM, Choi SY, Du G, Gergen JP, Frohman MA. (2006). A role for Phospholipase D in Drosophila embryonic cellularization. BMC Dev Biol. 6:60. PMID: 17156430.

Rial Verde EM, Lee-Osbourne J, Worley PF, Malinow R, Cline HT. (2006). Increased expression of the immediate-early gene arc/arg3.1 reduces AMPA receptor-mediated synaptic transmission. Neuron. 52(3):461-74. PMID: 17088212.

DiMartino SJ, Trujillo G, McVoy LA, Zhang J, and Kew RR. Upregulation of Vitamin D Binding Protein (Gc-Globulin) Binding Sites During Neutrophil Activation from a Latent Reservoir in Azurophil Granules. (Submitted).

Lin, W., Mittra, E., and Qin, Y.X. (2006). Determination of ultrasound phase velocity in trabecular bone using time dependent phase tracking technique. J. Biomech Eng. 128:24-9.

Mittra, E., S. Akella, and Y-X Qin (2006). The effects of embedding material, loading rate and magnitude, and penetration depth in nanoindentation of trabecular bone. Journal of Biomedical Materials Research A. 79:86-93.

Ocampo CJ, Morrison SA, Dubey SA, Shriver JW, Craddock BP, Steigbigel RT. Immune activation in asymptomatic HIV-1-infected individuals during antiretroviral therapy and treatment cessation. (Submitted).

Lipska B, T Peters, TM Hyde, N Halim, C Horowitz, S Mitkus, C Shannon-Weickert, M Matsumoto, A Sawa, R Straub, R Vakkalanka, MM Herman, DR Weinberger, JE Kleinman. (2006). Expression of DISC1 binding partners is reduced in schizophrenia and associated with DISC1 SNPs. Human Molecular Genetics. 15(8):1245-1258.

Alexander I. Sobolevsky, Michael L. Prodromou, Maria V. Yelshansky, and Lonnie P. Wollmuth. Subunit-specific Contribution of NMDA Receptor Subunits to Channel Structure and Gating. (In Preparation).


Loriol C, Dupuy F, Rampal R, Dlugosz MA, Haltiwanger RS, Maftah A (2006). Germot A. Molecular evolution of protein O-fucosyltransferase genes and splice variants. Glycobiology. 6(8):736-47. PMID: 16679357.

Herbert MR, Russo JP, Yang S, Roohi J, Blaxill M, Kahler SG, Cremer L, Hatchwell E (2006). Autism and environmental genomics. Neurotoxicology. 5:671-84.

Aranda V, Haire T, Nolan ME, Calarco JP, Rosenberg AZ, Fawcett JP, Pawson T, Muthuswamy SK. (2006). Par6-aPKC uncouples ErbB2 induced disruption of polarized epithelial organization from proliferation control. Nat Cell Biol. 8(11):1235-45. PMID: 17060907.


Seandel M, Shia J, Linkov I, Maki RG, Antonescu CR, Dupont J. (2006). The activity of sunitinib against gastrointestinal stromal tumor seems to be distinct from its antiangiogenic effects. Clin Cancer Res. 12:6203-4.

Zijlstra, A., Seandel, M., Kupriyanova, T.A., Partridge, J.J., Madsen, M.A., Hahn-Dantona, E.A., Quigley, J.P., and Deryugina, E.I. (2006). Proangiogenic role of neutrophil-like inflammatory heterophils during neovascularization induced by growth factors and human tumor cells. Blood. 107:317-27.

Weston, C., Teressa, G., Gordon, C., Weeks, B., and Prives, J. Agrin and Laminin induced acetylcholine receptor clustering via convergent signaling pathways involving Rho GTPases. (Submitted).

Koticha, D., Maurel, P., Zanazzi, G., Kane-Goldsmith, N., Basak, S., Babiarz, J., Salzer, J., Grumet, M. (2006). Neurofascin interactions play a critical role in clustering sodium channels, ankyrin G and beta IV spectrin at peripheral nodes of Ranvier. Devel. Biol. 293:1-12.

2005:
Jura, N., Archer, H., and Bar-Sagi, D. (2005). Chronic pancreatitis, pancreatic adenocarcinoma and the black box in-between. Cell Res. 15:72-7.

Zong X, Bien H, Chung CY, Yin L, Fang D, Chu B, Hsiao BS, and Entcheva E (2005). Electrospun fine-textured scaffolds for heart tissue constructs. Biomaterials. 26(26):5330-5338.

Entcheva E and Bien H (2005). Acoustic micromachining of three-dimensional surfaces for biological applications. Lab on a Chip. 5(2): 179-83. PMID: 15672132.

Brett IC, Johansson BE. (2005). Immunization against Influenza A virus: Comparison of conventional inactivated, live-attenuated, and recombinant baculovirus produced purified hemagglutinin and neuraminidase vaccines in a murine model system. Virology. 339(2):273-80.

Noy A, Yahalom J, Zaretsky L, Brett I, Zelenetz AD. (2005). Gastric mucosa-associated lymphoid tissue detected by clonotypic polymerase chain reaction despite continuous pathologic remission induced by involved-field radiotherapy. J Clin Oncol. 23(16):3768-72.

Windler-Hart SL, Chen KY, Chenn A. (2005). A cell behavior screen: identification, sorting, and enrichment of cells based on motility. BMC Cell Biol. 6:14.

DeJesus, N., Franco, D., Paul, A., Wimmer, E., and Cello, J. (2005). Mutation of a single conserved nucleotide between the cloverleaf and internal ribosome entry site attenuates poliovirus neurovirulence. J. Virol. 79:14235-43.

Mueller, S., Jiang, P., Reider, E., De Jesus, N., Iwasaki, A., Paul, A., Cello, J., and E. Wimmer. (2005). Pathogenesis and prevention of poliomyelitis and the chemical synthesis of poliovirus. Nova Acta Leopoldina NF 92, Nr. 344. 1-9.

Ford, B., Skowronek, K., Boykevisch, S., Bar-Sagi, D., and Nassar, N. (2005). Structure of the G60A mutant of Ras: implications for the dominant negative effect. J. Biol Chem. 280:25697-705.

Hill, B.T. and Skowronski, J. (2005). Human N-myristoyltransferases form stable complexes with lentiviral nef and other viral and cellular substrate proteins. Journal of virology. 79(2): 1133-1141. PMID: 15613341.

Evinger, C. and Kassem, I.S. (2005). Animal models of benign essential blepharospasm and hemifacial spasm. Animal Models of Movement Disorders (M LeDoux, Ed). Academic Press/Elsevier.

Helfman, D.M., Kim, E.J., Lukanidin, E., and Grigorian, M. (2005). The metastasis associated protein S100A4: role in tumor progression and metastasis. Br. J. Cancer. 92:1955-8.

LaLonde, M.M., Janssens, H., Rosenbaum, E., Choi, S.-Y., Gergen, J.P., Colley, N.J., Stark, W.S., and Frohman, M.A. (2005). Regulation of Phototransduction Responsiveness and Retinal Degeneration by a Phospholipase D-generated Signaling Lipid. J. Cell Biol. 169:471-9.

McVoy, L.A., and R.R. Kew. (2005). CD44 and annexin A2 mediate the C5a chemotactic cofactor function of the vitamin D binding protein. J. Immunol. 175:4754-60.

Mittra, E., Rubin, C., and Qin, Y.X. (2005). Interrelationship of trabecular mechanical and microstructural properties in sheep trabecular bone. J. Biomech. 38:1229-37.

Rampal, R., Li, A.S., Moloney, D.J., Georgiou, S.A., Luther, K.B., Nita-Lazar. A., and Haltiwanger, R.S. (2005). Lunatic fringe, manic fringe, and radical fringe recognize similar specificity determinants in O-fucosylated epidermal growth factor-like repeats. J. Biol Chem. 280:42454-63.

Rampal, R., Arboleda-Velasquez, J.F., Nita-Lazar, A., Kosik, K.S., and Haltiwanger, R.S. (2005). Highly conserved O-fucose sites have distinct effects on Notch1 function. J. Biol Chem. 280:32133-40.

Arboleda-Velasquez, J.F., Rampal, R., Fung, E., Darland, D.C., Liu, M., Martinez, M.C., Donahue, C.P., Navarro-Gonzalez, M.F., Libby, P., D'Amore, P.A., Aikawa, M., Haltiwanger, R.S., and Kosik, K.S. (2005). CADASIL mutations impair Notch3 glycosylation by Fringe. Hum. Mol. Genet. 14:1631-9.

Saxena, A., Ma, B., Schramm, L., and Hernandez, N. (2005). Structure-function analysis of the human TFIIB-related factor II protein reveals an essential role for the C-terminal domain in RNA polymerase III transcription. Mol. Cell. Biol. 25:9406-18.

Silva, J.M., Li, M.Z., Chang, K., Ge, W., Golding, M.C., Rickles, R.J., Siolas, D., Hu, G., Paddison, P.J., Schlabach, M.R., Sheth, N., Bradshaw, J., Burchard, J., Kulkarni, A., Cavet, G., Sachdanandam, R., McCombie, W.R., Cleary, M.A., Elledge, S.J., and Hannon, G.J. (2005). Second-generation shRNA libraries covering the mouse and human genomes. Nat. Genet. 37:1281-8.

Siolas, D., Lerner, C., Burchard, J., Ge, W., Linsley, P.S., Paddison, P.J., Hannon, G.J., and Cleary, M.A. (2005). Synthetic shRNAs as potent RNAi triggers. Nat. Biotechnol. 23:227-31.

Lee, L.P., Szema, R. (2005). Inspirations from Biological Optics for Advanced Photonic Systems." (Cover article) Science. 310:5751, 1148-1150.

Melendez-Vasquez, C., Carey, D.J., Zanazzi, G., Reizes, O., Maurel P., and Salzer, J.L. (2005). Differential expression of proteoglycans at central and peripheral nodes of Ranvier. Glia. 52:301-308.

Taveggia C., Zanazzi, G., Petrylak, A., Yano, H., Rosenbluth, J., Einheber, S., Xu, X., Esper, R., Loeb, J., Shrager, P., Falls, D.L., Chao, M.V., Role, L., and Salzer, J.L. (2005). Type III neuregulin-1 levels determine the ensheathment fate of axons. Neuron. 47:681-694.

2004:
Auster, A.S. and Joshua-Tor, L. (2004). The DNA-binding Domain of Human Papillomavirus Type 18 E1: Crystal Structure, Dimerization, and DNA Binding. Journal of Biological Chemistry. 279:3733-42.

Fetcho, J.R., and Bhatt, D.H. (2004). Genes and photons: new avenues into the neuronal basis of behavior. Curr. Opin. Neurobiol. 14:707-14. (Review).

Bhatt, D.H., Otto, S.J., Depoister, B., and Fetcho, J.R. (2004). Cyclic AMP-induced repair of zebrafish spinal circuits. Science. 305:254-8.

Fetcho, JR & Bhatt, DH (2004). Genes and photons: new avenues into the neuronal basis of behavior. Current Opinion in Neurobiology. 146:707-714.

Yin L, Bien H and Entcheva E (2004). Scaffold topography alters calcium handling in cultured cardiomyocyte networks. Am J Physiol – Heart & Circ Physiol. 287(3): H1276-H1285.

Entcheva E, Bien H, Yin L, Chung C-Y, Farrell M and Kostov Y (2004). Functional cardiac cell constructs on cellulose-based scaffolding. Biomaterials. 25(26):5753-5762.

Kilbourne ED, Pokorny BA, Johansson B, Brett I, Milev Y, Matthews JT. (2004). Protection of mice with recombinant influenza virus neuraminidase. J Infect Dis. 189(3):459-61.

Olszewski RT, Bukhari N, Zhou J, Kozikowski AP, Wroblewski JT, Shamimi-Noori S, Wroblewska B, Bzdega T, Vicini S, Barton FB, Neale JH (2004). NAAG peptidase inhibition reduces locomotor activity and some stereotypes in the PCP model of schizophrenia via group mGluR. J Neurochem. 89(4):876-85.

Hornbeck PV, Chabra I, Kornhauser JM, Skrzypek E, Zhang B (2004). PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation. Proteomics. 4(6):1551-61.

Rusu, L., Gambhir, A., McLaughlin, S. and Raedler, J. (2004). Fluorescence correlation spectroscopy studies of Peptide and protein binding to phospholipid vesicles. Biophys. J. 87:1044-53.

Gambhir, A., Hangyás-Mihályné, G., Zaitseva, I., Cafiso, D.S., Wang, J., Murray, D., Pentyala, S.N., Smith, S.O., and McLaughlin, S. (2004). Electrostatic sequestration of PIP2 on phospholipid membranes by basic/aromatic regions of proteins. Biophys. J. 86:2188-2207.

Wang, J., Gambhir, A., McLaughlin, S.M., and Murray, D. (2004). A Computational Model for the Electrostatic Sequestration of PI(4,5)P2 by Membrane-Adsorbed Basic Peptides. Biophys J. 86:1969-86.

Janardhan, A., Swigut, T., Hill, B., Myers, M.P., and Skowronski, J. 2004. HIV-1 Nef binds the DOCK2-ELMO1 complex to activate rac and inhibit lymphocyte chemotaxis. PLoS biology. 2(1): E6. PMID: 14737186.

Janardhan A, Swigut T, Hill B, Myers MP, and Skowronski J (2004). HIV-1 Nef Binds the DOCK2-ELMO1 Complex to Activate Rac and Inhibit Lymphocyte Chemotaxis. PLoS Biol. 2:65-76.

LaLonde, M. and Frohman, M.A. (2004). Phospholipase D. In Encyclopedia of Biological Chemistry. (eds. Lennarz, W. and Lane, M.D.). Academic Press/ Elsevier. 3:306-313.

Manganas L.N. and Trimmer J.S. (2004). Calnexin regulates mammalian Kv1 channel trafficking. Biochemical and Biophysical Research Communications. 322:577-84.

Zijlstra, A., Aimes, R.T., Zhu, D., Regazzoni, K., Kupriyanova, T., Seandel, M., Deryugina, EI., and Quigley, J.P. (2004). Collagenolysis-dependent angiogenesis mediated by matrix metalloproteinase-13 (collagenase-3). J. Biol Chem. 279:27633-45.

Szema, R., Rastegar, J., and Lee, L. (2004). An artificial compound eye for stereoendoscopy. J. Med. Eng. Technol. 28:117-24.

2003:
*Hu C, Ahmed M, Melia TJ, Sollner TH, Mayer T, Rothman JE. (2003). Fusion of cells by flipped SNAREs. Science. 300:1745-9.

Guo, H., Seixas-Silva, J.A. Jr., Epperly, M.W., Gretton, J.E., Shin, D.M., Bar-Sagi, D., Archer, H., and Greenberger, J.S. (2003). Prevention of radiation-induced oral cavity mucositis by plasmid/liposome delivery of the human manganese superoxide dismutase (SOD2) transgene. Radiat. Res. 159:361-70.

Epperly, M.W., H.L. Guo, M. Jefferson, S. Nie, J. Gretton, M. Bernarding, D. Bar-Sagi, H. Archer and J.S. Greenberger. (2003). Cell Phenotype Specific Kinetics of Expression of Intratracheally Injected Manganese Superoxide Dismutase-plasmid/liposomes (MnSOD-PL) during Lung Radioprotective Gene Therapy. Gene Therapy. 10:163-171.

Bhatt, DH, New York State MSTP Researchers Competition, Functional Regeneration in Zebrafish 9/2003.

Bhatt, DH and Fetcho, JR, New York State Spinal Cord Research Awards and Symposium, Functional Regeneration and In vivo imaging 2/2003.

Bien H
, Yin L and Entcheva E (2003). Cardiac cell networks on elastic microgrooved scaffolds. IEEE Eng Med Biol. 22(5):108-112.


Entcheva E and Bien H (2003). Tension development and nuclear eccentricity in topographically controlled cardiac syncytium. Biomedical Microdevices. 5(2): 163-168.

Brown ST, Brett I, Almenoff PL, Lesser M, Terrin M, Teirstein AS. (2003). Recovery of cell wall deficient organisms from blood does not distinguish between subjects with sarcoidosis and controls. Chest. 123(2):413-7.

Cuenca A, Cheng F, Wang H, Brayer J, Horna P, Gu L, Bien H, Borrello IM, Levitsky HI, and Sotomayor EM (2003). Extra-lymphatic solid tumor growth is not immunologically ignored and results in early induction of antigen-specific T-cell anergy: dominant role of cross-tolerance to tumor antigens. Cancer Res. 63:9007-15.

Johansson, BE and Brett, IC. (2003). Variation in divalent cation requirements of influenza A virus N2 neuraminidases. J Biochem. 134(2):345-352.

Makowski A, Brzostek S, Cohen RN, Hollenberg AN. (2003). Determination of nuclear receptor corepressor interactions with the thyroid hormone receptor. Mol Endocrinol. 17(2):273-86.

Price, K. S., Friend, D. S., Mellor, E. A., De Jesus, N., Watts, G. F., and J. A. Boyce. (2003). CC chemokine receptor 3 mobilizes to the surface of human mast cells and potentiates immunoglobulin E-dependent generation of interleukin 13. Am. J. Respir. Cell. Mol. Biol. 28:420-427.

Newman, GC, Delucia-Deranja, E, Tudorica, A, Hospod, F.E., and Patlak, C.S. (2003). Cerebral blood volume measurements by T*2-weighted MRI and contrast infusion. Magn. Reson. Med. 50:844-55.

Grace, K.S., Bronson, R.A., and Ghebrehiwet, B. (2003). Ligation of the C1q Receptor,gC1qR/p33, Associates with Both the avb3 Integrin and Vitronectin and Causes Protein Phosphorylation. Fertil Steril. 80:S5.

Kamenetz, F., Tomita, T., Hsieh, H., Seabrook, G., Borchelt, D., Iwatsubo, T., Sisodia, S., and Malinow, R. (2003). APP Processing and Synaptic Function. Neuron. 37(6):925-37.

Indyk, J.A., Chen, Z.-l., Tsirka, S.E., and Strickland, S. (2003). Laminin chain expression suggests that laminin-10 is a major isoform in the mouse hippocampus and is degraded by the tissue plasminogen activator/plasmin protease cascade during excitotoxic injury. Neuroscience. 116:359-71.

Chen, Z.-l., Indyk, J.A., and Strickland, S. (2003). The hippocampal laminin matrix is dynamic and critical for neuronal survival. Molecular Biology of the Cell. 14:2665-2676.

Ronald N. Cohen, Laurie E. Cohen, Diego Botero, Christine Yu, Angela Sagar, Magdalena Jurkiewicz, and Sally Radovick. (2003). "Enhanced Repression by HESX1 as a Cause of Hypopituitarism and Septooptic Dysplasia." J Clin Endocrinol Metab 88(10): 4832-4839.

Kamenetz, F., Tomita, T., Hsieh, H., Seabrook, G., Borchelt, D., Iwatsubo, T., Sisodia, S., and Malinow, R. (2003). APP processing and synaptic function. Neuron. 37:925-37.

Kim, E.J., and Helfman, D. M. (2003). Characterization of the metastasis-associated
protein, S100A4. Roles of calcium binding and dimerization in cellular localization and interaction with myosin. J. Biol Chem. 278:30063-30073.

Suzuki, T., Kwofie, M.A., and Lennarz, W.J. (2003). Ngly1, a mouse gene encoding a deglycosylating enzyme implicated in proteasomal degradation: expression, genomic organization, and chromosomal mapping. Biochem. Biophys. Res. Commun. 304:326-32.

Mittra, E.S., A.J. Singer, D. Bluestein, and J.D. Hollander (2003). Simulated wound irrigation impact pressures. Israeli Journal of Emergency Medicine. 3:9-16.

Pessler, F. and Hernandez, N. (2003). Flexible DNA binding of the BTB/POZ-domain protein FBI-1. J. Biol. Chem. 31:29327-35.

Sturla, L., Rampal, R., Haltiwanger, R.S., Fruscione, F., Etzioni, A., and Tonetti, M. (2003). Differential Terminal Fucosylation of N-linked Glycans Versus Protein O-fucosylation in Leukocyte Adhesion Deficiency Type II (CDG IIc). J. Biol. Chem. 278:26727-26733.

Wang, J., Rogove, A.D., Tsirka A.E. and Tsirka, S.E. (2003). Protective Role of Tuftsin Fragment 1-3 in an Animal Model of Intracerebral Hemorrhage. Annals of Neurology. 54:655-664.

Brian P. Helmke, Amy B. Rosen, and Peter F. Davies (2003). Mapping Mechanical Strain of an Endogenous Cytoskeletal Network in Living Endothelial Cells. Biophys. J. 84:2691-2699.

Weston, C., Gordon, C., Teressa, G., Hod, E., Ren, X.-D., and Prives, J. (2003). Cooperative regulation by Rac and Rho of agrin-induced acetylcholine receptor clustering in muscle cells. J Biol Chem. 278:6450-5.

Weston C., Gordon C, Teressa G, Hod E, Ren XD, and Prives J (2003). Cooperative regulation by Rac and Rho of agrin-induced acetylcholine receptor clustering in muscle cells. J. Biol. Chem. 278:6450-5.

2002:
Epperly, M.W., Sikora, C.A., DeFilippi, S.J., Gretton, J.E., Bar-Sagi, D., Archer, H., Carlos, T., Guo, H., and Greenberger, J.S. (2002). Pulmonary irradiation-induced expression of VCAM-I and ICAM-I is decreased by manganese superoxide dismutase-plasmid/liposome (MnSOD-PL) gene therapy. Biol. Blood Marrow Transplant. 8:175-87.

Archer, H. and D., Bar-Sagi. (2002). Ras and Rac as Activators of Reactive Oxygen Species (ROS). Methods Mol. Biol. 189:67-73.

Wiestner A, Cho HJ, Asch AS, Michelis MA, Zeller JA, Peerschke EI, Weksler BB, Schechter GP. (2002). Rituximab in the treatment of acquired factor VIII inhibitors. Blood. 100(9):3426-8. PMID: 12384448.

Brett, I., J. Werber, and E.D. Kilbourne. (2002). Rapid confirmation by RFLP of transfer to vaccine candidate reassortment viruses of the principal 'high yield' gene of influenza A viruses. J Virol Methods. 100:133-40.

Kilbourne ED, Smith C, Brett I, Pokorny BA, Johansson B, Cox N. (2002). The total influenza vaccine failure of 1947 revisited: Major intrasubtypic antigenic change can explain failure of vaccine in a post-World War II epidemic. Proc Nat Acad Sci. 99(16):10748-10752.

Cheng S, Brzostek S, Lee SR, Hollenberg AN, Balk SP. (2002). Inhibition of the dihydrotestosterone-activated androgen receptor by nuclear receptor corepressor. Mol Endocrinol. 16(7):1492-501.

Bacich DJ, Ramadan E, O’Keefe DS, Bukhari N, Wegozsewska I, Ojeifo O, Olszewski R, Wrenn CC, Bzdega T, Wroblewska B, Heston WD, Neale JH. (2002). Deletion of the glutamate carboxypeptidase II gene in mice reveals a second enzyme activity that hydrolyzes N-acetylaspartylglutamate. J Neurochem. 83(1):20-9.

Chen, G., and Stenlund, A. (2002). Sequential and ordered assembly of E1 initiator complexes on the papillomavirus origin of DNA replication generates progressive structural changes related to melting. Mol. Cell Biol. 22:7712-20.

Tudorica, A., Li, H., Hospod, F.E., DeLucia-Deranja, E., Huang, W., Patlak, C.S., and Newman, G.C. (2002). Cerebral Blood Volume Measurements by Rapid Contrast Infusion and T2*-Weighted Echo Planar MRI. Magn. Reson. Med. 47:1145-1157.

Wang J., Gambhir A., Hangyás-Mihályné G., Murray D., Golebiewska U., and McLaughlin S. (2002). How Phosphatidylinositol 4,5-Bisphosphate Binds to the Basic Effector Domain of Myristoylated Alanine-Rich C Kinase Substrate (MARCKS). J. Biol. Chem. 277:34401-34412.

McLaughlin, S., Wang, J., Gambhir, A., and Murry, D. (2002). PIP2 and Proteins: Interactions, Organization and Information Flow. Annual Rev. of Biophysics Biomolecular Structure. 31:151-75.

Grace, K.S., Bronson, R.A., and Ghebrehiwet, B. (2002). Surface Expression of Complement Receptor gC1q-R/p33 Is Increased on the Plasma Membrane of Human Spermatozoa after Capacitation. Biol. Reprod. 66: 823-9.

Munch, J., Janardhan, A., Stolte, N., Stahl-Hennig, C., Ten Haaft, P., Heeney, J.L., Swigut, T., Kirchhoff, F., and Skowronski, J. (2002). T-cell receptor:CD3 down-regulation is a selected in vivo function of simian immunodeficiency virus Nef but is not sufficient for effective viral replication in rhesus macaques. J. Virol. 76:12360-4.

Evinger, C., Bao, J.B., Powers, A.S., Kassem, I.S., Schicatano, E.J., Henriquez, V.M., and Peshori, K.R. (2002). Dry eye, blinking, and blepharospasm. Mov. Disord. 17:S75-8.

Petrov AI, Khalil DN, Kazaryan RL, Savintsev IV, Sukhorukov B (2002). Structural and thermodynamic features of complexes formed by DNA and synthetic polynucleotides with dodecylamine and dodecyltrimethylammonium bromide. Bioelectrochemistry. 58(1):75-85.


Araya, E., Berthier, C., Kim, E., Yeung, T., Wang, X., and Helfman, D. M. (2002). Regulation of coiled-coil assembly in tropomyosins. J. Struct. Biol. 137:176-183.

Campomanes C.R., Carroll K.I., Manganas L.N., Hershberger M.E., Gong B., Antonucci D.E., Rhodes K.J., and Trimmer J.S. (2002). Kv?Beta Subunit Oxidoreductase Activity and Kv1 Potassium Channel Trafficking. Journal of Biological Chemistry. 277:8298-8305.

Rubin, C., Turner, A.S., Muller, R., Mittra, E., McLeod, K., Lin, W., and Qin, Y.X. (2002). Quantity and quality of trabecular bone in the femur are enhanced by a strongly anabolic, noninvasive mechanical intervention. Journal of Bone and Mineral Res. 17:349-57.

Rogove, A.D., Lu, W., and Tsirka S.E. (2002). Microglial activation and recruitment, but not proliferation, suffice to mediate neurodegeneration. Cell Death and Differentiation. 9:801-806.

Gil, O.D., Zhang, L., Chen, S., Ren, Y.Q., Pimenta, A., Zanazzi, G., Hillman, D., Levitt, P. and Salzer, J.L. (2002). Complementary expression and heterophilic interactions between IgLON family members neurotrimin and LAMP. J. Neurobiol. 51:190-204.

Rambukkana, A., Zanazzi, G., Tapinos, N. and Salzer, J.L. (2002). Contact-dependent induction of demyelination by Mycobacterium leprae in the absence of immune cells. Science. 296:927- 931.

Chen, S., Gil, O.D., Ren, Y.Q., Zanazzi, G., Salzer, J.L. and Hillman, D. (2002). Neurotrimin expression during cerebellar development suggests roles in axon fasciculation and synaptogenesis. J. Neurocytol. 30:927-937.

2001:
Ritter, D.A., Bhatt, D.H., and Fetcho, J.R. (2001). In vivo imaging of zebrafish reveals differences in the spinal networks for escape and swimming movements. J. Neurosci. 21:8956-65.

Bhatt, DH*, Ritter, DA*, Fetcho JR (2001). In vivo imaging of zebrafish reveals differences in the spinal networks for escape and swimming movements. J. Neurosci. 1521: 8956-8965.

Cohen RN, Brzostek S, Kim B, Chorev M, Wondisford FE, Hollenberg AN. (2001). The specificity of interactions between nuclear hormone receptors and corepressors is mediated by distinct amino acid sequences within the interacting domains. Mol Endocrinol. 15(7):1049-61.

Chen, G., and Stenlund, A. (2001). The E1 initiator recognizes multiple overlapping sites in the papillomavirus origin of DNA replication. J. Virol. 75:292-302.

Ho, L., Xiang, Z., Mukherjee, P., Zhang, W., De Jesus, N., Mirjany, M., Yemul, S., and G. M. Pasinetti. (2001). Gene expression profiling of the tau mutant (P301L) transgenic mouse brain. Neurosci. Lett. 310:1-4.

DiMartino, S.J., Shah, A.B., Trujillo, G., and Kew, R.R. (2001). Elastase controls the binding of the vitamin D-binding protein (Gc-globulin) to neutrophils: a potential role in the regulation of C5a co-chemotactic activity. J. Immunol. 166:2688-94.

Singh, N., Talalayeva, Y., Tsiper M., Romanov, V., Dranovsky, A., Colflesh, D., Rudamen, G., Vitek, M.P., Shen, J., Yang, X.D., Goldgaber, D., and Schwarzman, A.L. (2001). The role of Alzheimer's disease-related presenilin 1 in intercellular adhesion. Exp. Cell Res. 263:1-13.

Dranovsky, A., Vincent, I., Gregori L., Schwarzman, A.L., Enghild, J., Strittmatter, W., Davies, P., and Goldgaber, D. (2001). Cdc2 phosphorylated nucleolin demarcates mitotic changes and Alzheimer’s disease pathology. Neurobiol of Aging. 22:517-528.

Suzuki, T., Park, H., Kwofie, M.A., and Lennarz, W.J. (2001). Rad23 provides a link between the Png1 deglycosylating nzyme and the 26 S proteasome in yeast. J. Biol. Chem. 276:21601-7.

Robert L. Levine, Holly Miller, Arthur Grollman, Eiji Ohashi, Haruo Ohmori, Chikahide Masutani, Fumio Hanaoka, and Masaaki Moriya (2001). Translesion DNA synthesis catalyzed by human pol h and pol k across 1,N6-ethenodeoxyadenosine. Journal of Biological Chemistry. 276:18717-18721.

Manganas L.N., Wang Q., Scannevin R.H., Antonucci D.E., Rhodes K.J., and Trimmer J.S. (2001). Identification of a Trafficking Determinant Localized to the Kv1 Potassium Channel Pore. Proceedings of the National Academy of Science. 98:14055-14059.

Manganas L.N., Akhtar S., Antonucci D.E., Campomanes C.R., Oliver Dolly J. and Trimmer J.S. (2001). Episodic Ataxia Type-1 Mutations in the Kv1.1 Potassium Channel Display Distinct Folding and Intracellular Trafficking Properties. Journal of Biological Chemistry. 276:49427-49434.

Seandel, M., Noack-Kunnmann, K., Zhu, D., Aimes, R.T., and Quigley. J.P. (2001). Growth factor-induced angiogenesis in vivo requires specific cleavage of fibrillar type I collagen. Blood. 97:2323-32.

Lustig M., Zanazzi G., Sakurai T., Blanco C., Levinson S.R., Lambert S., Grumet M., and Salzer J.L. (2001). Nr-CAM and neurofascin interactions regulate ankyrin G and sodium channel clustering at the node of Ranvier. Curr. Biol. 11:1864-1869. *Equal contribution.

Melendez-Vasquez, C., Rios, J.C., Zanazzi, G., Bretscher, A., Lambert, S. and Salzer, J.L. (2001). Nodes of Ranvier form in association with ERM-positive Schwann cell microvilli. Proc. Natl. Acad. Sci. 98:1235-1240.

Zanazzi, G., Einheber, S., Westreich, R., Hannocks, M.-J., Bedell-Hogan, D., Marchionni, M.A. and Salzer, J.L. (2001). Glial growth factor/neuregulin inhibits myelination and induces demyelination. J. Cell Biol. 152:1289-1299.

2000:
W.S. Asch and N. Schechter. (2000). Plasticin, a Type III Neuronal Intermediate Filament Protein, Assembles as an Obligate Heteropolymer: Implications for Axonal Flexibility. J. Neurochem. 75:1475-1486.

McCaughran, J.A. Jr., Bell, J. III, and Hitzemann, R.J. (2000). Fear-potentiated startle response in mice: genetic analysis of the C57BL/6J and DBA/2J intercross. Pharmacol. Biochem. Behav. 65:301-12.

Enemark, E.J., Chen, G., Vaughn, D.E., Stenlund, A., and Joshua-Tor, L. (2000). Crystal structure of the DNA binding domain of the replication initiation protein E1 from papillomavirus. Mol. Cell. 6:149-58.

Gillitzer, E., Chen, G., and Stenlund, A. (2000). Separate domains in E1 and E2 proteins serve architectural and productive roles for cooperative DNA binding. EMBO J. 19:3069-79.

Chen, G., and Stenlund, A. (2000). Two patches of amino acids on the E2 DNA binding domain define the surface for interaction with E1. J. Virol. 74:1506-12.

Ochi, H., De Jesus, N. H., Hsieh, F. H., Austen, K. F., and J. A. Boyce. (2000). IL-4 and -5 prime human mast cells for different profiles of IgE-dependent cytokine production. Proc. Natl. Acad. Sci. USA. 97:10509-10513.

Carl, S., Iafrate, A.J., Lang, S.M., Stolte, N., Stahl-Hennig, C., Matz-Rensing, K., Fuchs, D., Skowronski, J., and Kirchhoff, F. (2000). Simian immunodeficiency virus containing mutations in N-terminal tyrosine residues and in the PxxP motif in Nef replicates efficiently in rhesus macaques. J. Virol. 74:4155-64.

Iafrate, A.J., Carl, S., Bronson, S., Stahl-Hennig, C., Swigut, T., Skowronski, J., and Kirchhoff, F. (2000). Disrupting surfaces of nef required for downregulation of CD4 and for enhancement of virion infectivity attenuates simian immunodeficiency virus replication in vivo. J. Virol. 74:9836-44. Erratum in: J. Virol . 74:12002.

Swigut, T., Iafrate, A.J., Muench, J., Kirchhoff, F., and Skowronski, J. (2000). Simian and human immunodeficiency virus Nef proteins use different surfaces to downregulate class I major histocompatibility complex antigen expression. J. Virol. 74:5691-701.

Carl, S., Daniels, R., Iafrate, A.J., Easterbrook, P., Greenough, T.C., Skowronski, J., and Kirchhoff, F. (2000). Partial "repair" of defective NEF genes in a long-term nonprogressor with human immunodeficiency virus type 1 infection. J. Infect Dis. 181:132-40.

Robert L. Levine, In-Young Yang, Munfarah Hossain, Gagan A. Pandya, Arthur P. Grollman, and Masaaki Moriya (2000). Mutagenesis induced by a Single 1,N6-Ethenodeoxyadenosine Adduct in Human Cells. Cancer Research. 60:4098-4104.

Tiffany A.F., Manganas L.N., Kim E., Sheng M., and Trimmer J.S. (2000). PSD-95 and SAP-97 Exhibit Distinct Mechanisms for Regulating K+ Channel Surface Expression and Clustering. Journal of Cell Biology. 148:147-157.

Manganas L.N. and Trimmer J.S. (2000). Subunit Composition Determines Kv1 Potassium Channel Surface Expression. Journal of Biological Chemistry. 275:29685-29693.

Melchor JP, McVoy L, and Van Nostrand WE (2000). Charge alterations of E22 enhance the pathogenic properties of amyloid beta-protein. J. Neurochem. 74:2209-2212.

Weston, C.A., Anova, L., Rialas,C., Prives, J.M., and Weeks, B.S. (2000). Laminin-1 activates Cdc42 in the mechanism of laminin-1-mediated neurite outgrowth. Exp. Cell Res. 260:374-8.

Weston, C., Yee, B., Hod, E., and Prives, J. (2000). Agrin-induced acetylcholine receptor clustering is mediated by the small Rho guanine nucleotide exchange factors Rac and Cdc42. J. Cell Biol. 150:205-212.

Rialas, C.M., Nomizu, M., Patterson, M., Kleinman, H.K., Weston, C.A., and Weeks, B.S. (2000). Nitric oxide mediates laminin-induced neurite outgrowth in PC12 cells. Exp. Cell Res. 260:374-378.

Ng, V.*, Zanazzi, G.*, Timpl, R., Talts, I.F., Salzer, J.L., Brennan, P.J. and Rambukkana, A. (2000). Role of the cell wall phenolic glycolipid-1 in the peripheral nerve predilection of Mycobacterium leprae. Cell. 103:511-524. *Equal contribution.

Tikoo, R., Zanazzi, G., Shiffman, D., Salzer, J. and Chao, M.V. (2000). Cell cycle control of Schwann cell proliferation: role of cyclin-dependent kinase-2. J. Neurosci. 20:4627-4634.

1999:
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Leake, D , W.S. Asch, Canger, A.K., and Schechter, N. (1999). Gefiltin expression in zebrafish embryos: sequential expression of two neurofilament proteins in retinal ganglion cells. Differentiation. 65:181-189.

McCaughran, J. Jr., Bell, J., and Hitzemann, R. (1999). On the relationships of high-frequency hearing loss and cochlear pathology to the acoustic startle response (ASR) and prepulse inhibition of the ASR in the BXD recombinant inbred series. Behav Genet. 29:21-30.

Sotomayor EM, Borrello I, Tubb E, Rattis FM, Bien H, Lu Z, Fein S, Schoenberger S, and Levitsky HI (1999). Conversion of tumor-specific CD4+ T-cell tolerance to T-cell priming through in vivo ligation of CD40. Nature Medicine. 5:780-7.

DiMartino, S.J., and Kew, R.R. (1999). Initial characterization of the vitamin D binding protein (Gc-globulin) binding site on the neutrophil plasma membrane: evidence for a chondroitin sulfate proteoglycan. J. Immunol. 163:2135-42.

Faris S., Wilson D., Barrett H., Dougherty D., Gindi G., Hsiao I.T. (1999). Using a digital anatomical phantom to optimize an imaging system. In Proc. SPIE Medical Imaging. vol. 3659.

Schwarzman, A. L., Singh, N., Tsiper, M., Gregori, L., Dranovsky, A., Vitek M. P., Glabe, C.G., St. George-Hyslop, P., and Goldgaber, D. (1999). Endogenous presenilin 1 redistributes to the surface of lamellipodia upon adhesion of Jurkat cells to a collagen matrix. Proc. Nat. Acad. Sci. 96:7932-7937.

Kazantsev, A., Preisinger, E., Dranovsky, A., Goldgaber, D., and Housman, D. (1999). Insoluble detergent-resistant aggregates form between pathological and nonpathological lengths of polyglutamine in mammalian cells. Proc. Nat. Acad. Sci. 96:11404-11409.

Murray D., Arbuzova A., Mihalyne G., Gambhir A., Ben-Tal N., Honig B., and McLaughlin S. (1999). Electrostatic Properties of Membranes Containing Acidic Lipids and Adsorbed Basic Peptides: Theory and Experiment. Biophys. J. 77:3176-3188.

Skowronski, J., Greenberg, M.E., Lock, M., Mariani, R., Salghetti, S., Swigut, T., and Iafrate, A.J. (1999). HIV and SIV Nef modulate signal transduction and protein sorting in T cells. Cold Spring Harb. Symp. Quant. Biol. 64:453-63. ( Review).

Lock, M., Greenberg, M.E., Iafrate, A.J., Swigut, T., Muench , J., Kirchhoff, F., Shohdy, N., and Skowronski, J. (1999). Two elements target SIV Nef to the AP-2 clathrin adaptor complex, but only one is required for the induction of CD4 endocytosis. EMBO J. 18:2722-33.

Carl, S., Iafrate, A.J., Lang, S.M., Stahl-Hennig, C., Kuhn, E.M., Fuchs, D., Matz-Rensign, K., Ten Haaft, P., Heeney, J.L., Skowronski, J., and Kirchhoff, F. (1999). The acidic region and conserved putative protein kinase C phosphorylation site in Nef are important for SIV replication in rhesus macaques. Virology. 257:138-55.

Carl, S., Iafrate, A.J., Skowronski, J., Stahl-Hennig, C., and Kirchhoff, F. (1999). Effect of the attenuating deletion and of sequence alterations evolving in vivo on simian immunodeficiency virus C8-Nef function. J. Virol. 73:2790-7.

Indyk, J.A., Chen, Z.-L., and Strickland, S. (1999). Proteases and degradation of extracellular matrix in neurodegeneration. Fibrinolysis & Proteolysis. 13:64-71.

Chen, Z.-l., Indyk, J.A., Bugge, T.H., Kombrinck, K.W., Degen, J.L, and Strickland, S. (1999). Neuronal death and blood-brain barrier breakdown after excitotoxic injury are independent processes. J. Neuroscience. 19:9813-9820.

Liu, M., Lee, B.H., and Mathews, M.B. (1999). Involvement of RFX1 protein in the regulation of the human proliferating cell nuclear antigen promoter. J. Biol. Chem. 274:15433-39.

Rogove, A.D., Siao C-J, Keyt, B., Strickland, S. and Tsirka, S. E. (1999). Activation of microglia reveals a non-proteolytic cytokine function for tissue plasminogen activator in the central nervous system. Journal of Cell Science. 112:4007-4016.

Venkatesan, C., and Kritzer, M.F. (1999). Perinatal gonadectomy affects corticocortical connections in motor but not visual cortex in adult male rats. J. Comp. Neurol. 415:240-65.

Ching, W., Zanazzi, G., Levinson, S.R. and Salzer, J.L. (1999). Clustering of neuronal sodium channels requires contact with myelinating Schwann cells. J. Neurocytol. 28:295-301.

1998:
Alexander, D.S., Sipley, J.D., and Quigley, J.P. (1998). Autoactivation of avian urokinase-type plasminogen activator (uPA). A novel mode of initiation of the uPA/plasmin cascade. J. Biol. Chem. 273:7457-61.

W.S., Asch, D., Leake, A.K., Canger, M., Passini, F., Argenton, and N., Schechter. (1998). Cloning of the Zebrafish Neurofilament Proteins Plasticin and Gefiltin: Increased mRNA Expression in Retinal Ganglion Cells After Optic Nerve Crush. J. Neurochem. 71:20-32.

M.A., Passini, L. Kurtzman, A. K., Canger, W. S., Asch, G. A., Wray, P. A., Raymond, and N. Schechter. (1998). Cloning of Zebrafish vsx1: Expression of a paired-Like homeobox Gene During CNS Development. Dev. Genetics. 23:128-141.

A.K. Canger, M. Passini, W. S. Asch, D. Leake, B. T. Zafonte, E. Glasgow, and N. Schechter. (1998). Restricted Expression of the Neurofilament Protein Plasticin During Zebrafish Development. J. Comp. Neurol. 399:561-572.

Chen, G., and Stenlund, A. (1998). Characterization of the DNA-binding domain of the bovine papillomavirus replication initiator E1. J. Virol. 72:2567-76.

Dougherty D.A., Hsiao I.T., Wang W., and Gindi G.R. (1998). Computerized Biological Brain Phantom for Evaluation of PET and SPECT Reconstruction. IEEE Transactions in Nuclear Sci. 45:1238-43.

Greenberg, M.E., Iafrate, A.J., Skowronski, J. (1998). The SH3 domain-binding surface and an acidic motif in HIV-1 Nef regulate trafficking of class I MHC complexes. EMBO J. 17:2777-89.

Lee, B.H., Liu M, Mathews, M.B. (1998). Regulation of the human proliferating cell nuclear antigen promoter by the adenovirus E1A-associated protein. J. Virol. 72:1138-45.

Gening, L., Takeshita, M., Levine, R.L., Peden, K.W., and Grollman, A.P. (1998). Extrachromosomal unequal homologous recombination and gene conversion in simian kidney cells: effects of UV damage. Mutation Research. 407:11-24.

Pessler, F. and Hernandez, N. (1998). The HIV type 1 inducer of short transcripts activates the synthesis of DRB resistant short transcripts in vitro. J. Biol. Chem. 273:5375-84.

Rogove, A.D. and Tsirka, S.E. (1998). Neurotoxic responses by microglia elicited by excitotoxic injury in the mouse hippocampus. Current Biology. 8:19-25.

Galbiati, F., Volonte, D., Gil, O., Zanazzi, G., Salzer, J.L., Sargiacomo, M., Scherer, P.E., Engelman, J.A., Schlegel, A., Parenti, M., Okamoto, T. and Lisanti, M.P. (1998). Expression of caveolin-1 and -2 in differentiating PC12 cells and dorsal root ganglion neurons: caveolin-2 is up-regulated in response to cell injury. Proc. Natl. Acad. Sci. 95:10257-10262.

Rambukkana, A., Yamada, H., Zanazzi, G., Mathus, T., Salzer, J.L., Yurchenco, P.D., Campbell, K.P. and Fischetti, V.A. (1998). Role of alpha-dystroglycan as a Schwann cell receptor for Mycobacterium leprae. Science. 282:2076-2079.

Gil, O.D., Zanazzi, G., Struyk, A. and Salzer, J.L. (1998). Neurotrimin mediates bifunctional effects on neurite outgrowth via homophilic and heterophilic interactions. J. Neurosci. 18:9312- 9325.

1997:
Sipley, J.D., Alexander D.S., Testa J.E., and Quigley, J.P. (1997). Introduction of an RRHR motif into chicken urokinase-type plasminogen activator (ch-uPA) confers sensitivity to plasminogen activator inhibitor (PAI)-1 and PAI-2 and allows ch-uPA-mediated extracellular matrix degradation to be controlled by PAI-1. Proc. Natl. Acad. Sci. USA. 94:2933-8.

Kew, R.R., Peng, T., DiMartino, S.J., Madhavan, D., Weinman, S.J., Cheng, D., and Prossnitz, E.R. (1997). Undifferentiated U937 cells transfected with chemoattractant receptors: a model system to investigate chemotactic mechanisms and receptor structure/function relationships. J. Leukoc. Biol. 61:329-37.

Gindi G., Dougherty D., Hsiao I., and Rangarajan A. (1997). Autoradiographic-based phantoms for emission tomography. In Proc. SPIE Medical Imaging. 3034:403-414.

Lang, S.M., Iafrate, A.J., Stahl-Hennig, C., Kuhn, E.M., Nisslein, T., Kaup, F.J., Haupt, M., Hunsmann, G., Skowronski, J., and Kirchhoff, F. (1997). Association of simian immunodeficiency virus Nef with cellular serine/threonine kinases is dispensable for the development of AIDS in rhesus macaques. Nat. Med. 3:860-5.

Iafrate, A.J., Bronson, S., and Skowronski, J. (1997). Separable functions of Nef disrupt two aspects of T cell receptor machinery: CD4 expression and CD3 signaling. EMBO J. 16:673-84.

Lee, B.H., and Mathews, M.B. (1997). Transcriptional coactivator cAMP response element binding protein mediates induction of the human proliferating cell nuclear antigen promoter by the adenovirus E1A oncoprotein. Proc. Natl. Acad. Sci. USA. 94:4481-6.

Wreden, C., Verrotti, A.C., Schisa, J.A., Lieberfarb, M.E., and Strickland, S. (1997). Nanos and pumilio establish embryonic polarity in Drosophila by promoting posterior deadenylation of hunchback mRNA. Development. 124:3015-23.

Pessler, F
., Pendergrast P.S., and Hernandez, N. (1997). Purification and characterization of FBI-1, a cellular factor that binds to the HIV type 1 inducer of short transcripts. Mol. Cell. Biol. 17:3786-3798

Tsirka, S.E., Rogove, A.D., Bugge, T., Degen, J. and Strickland, S. (1997). An extracellular proteolytic cascade promotes neuronal degeneration in the mouse hippocampus. J. Neuroscience. 17:543-552.

Einheber, S., Zanazzi, G., Ching, W., Scherer, S., Milner, T.A., Peles, E. and Salzer, J.L. (1997). The axonal membrane protein Caspr/neurexin IV is a component of the septate-like paranodal junctions that assemble during myelination. J. Cell Biol. 139:1495-1506.

1996:
Alexander, D.S
., Aimes, R.T., and Quigley, J.P. (1996). What structure and function of avian plasminogen activator and matrix metalloproteinase-2 reveal about their counterpart mammalian enzymes, their regulation and their role in tumor invasion. Enzyme Protein. 49:38-58. (Review).

Bhatt, DH, Green, BA , (1996). The Molecular Biology of Regeneration in the CNS. Concepts in Neurosurgery: The Molecular Basis of Neurological Disease. 80:111-169.

Dranovsky, A., Oxberry, W., Lyubsky, S., and Goldgaber, D. (1996). APP is associated with mitotic centrosomes and a distinct cytoplasmic network which colocalizes with depolymerized tubulin. Neurobiology of Aging. 17:S196-S196.

Wade, P.R., Chen, J., Kassem, I.S., Blakely, R.D., and Gershon, M.D. (1996). Localization and function of a 5-HT transporter in crypt epithelia of the gastrointestinal tract. J. Neurosci. 16:2352-2364.

Lieberfarb, M.E., Chu, T., Wreden, C., Theurkauf, W., Gergen, J.P., and Strickland, S. (1996). Mutations that perturb poly(A)-dependent maternal mRNA activation block the initiation of development. Development. 122:579-88.

Strickland, S., Gualandris, A., Rogove, A.D. and Tsirka, S. E. (1996). Extracellular proteases in neuronal function and degeneration. CSH Symposia on Quantitative Biology. 61:739-745.

Tsirka, S.E., Rogove, A.D. and Strickland, S. (1996). tPA and neuronal death. Nature. 384:123-124.

1995:
Dranovsky, A., Goldfarb, L., Gajdusek, D.C., and Goldgaber, D. (1995). Apolipoprotein E epsilon 4 allele does not correlate with amyloid plaques in transmissible spongiform encephalopathies. Amyloid: Int. J. Exp. Clin. Invest. 2:36-38.

Labrie, C., Lee, B.H., and Mathews, M.B. (1995). Transcription factors RFX1/EF-C and ATF-1 interact with the adenovirus E1A-responsive element of the human proliferating cell nuclear antigen promoter. Nuc. Acids Res. 23:3732-41.

1994:
Stefansson, S., Aimes, R.T., Seward, N.B., Alexander, D.S., and Quigley, J.P. (1994). Native TIMP-free 70 kDa progelatinase (MMP-2) secreted at elevated levels by RSV transformed fibroblasts. J. Cell. Physiol. 161:419-28.

Salles, F.J., Lieberfarb, M.E., Wreden, C., Gergen, J.P., and Strickland, S. (1994). Coordinate initiation of Drosophila development by regulated polyadenylation of maternal messenger RNAs. Science. 266:1996-9.

Desser, T.S., Rubin, D.L., Muller, H.H., Qing, F., Khodor, S., Zanazzi, G., Young, S.W., Ladd, D.L., Wellons, J.A., Kellar, K.E., Toner, J.L. and Snow, R.A. (1994). Dynamics of tumor imaging with Gd-DTPA-polyethylene glycol polymers: dependence on molecular weight. J. Mag. Res. Imag. 4:467-472.

Young, S.W., Sidhu, M.K., Qing, F., Muller, H.H., Neuder, M., Zanazzi, G., Mody, T.D., Hemmi, G., Dow, W., Mutch, J.D., Sessler, J.L. and Miller R.A. (1994). Preclinical evaluation of gadolinium (III) texaphyrin complex: a new paramagnetic contrast agent for magnetic resonance imaging. Invest. Radiol. 29:330-338.

1991:
Whitbread, J.A., Sims, M., and Katz, E.R. (1991). Evidence for the presence of a growth factor in Dictyostelium discoideum. Dev Genet. 12:78-81.

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